2021-09-25 18:37:03,739 INFO BenchmarkPipeline --- START PROCESSING 'SRR8284500-SRR8284501-SRR8984911' --- 2021-09-25 18:37:03,739 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR8284500.sra 2021-09-25 18:37:03,739 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__ 2021-09-25 18:37:03,782 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpxrlj9qhm "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR8284500.sra" 2021-09-25 19:12:32,828 INFO SimpleSubprocess Sra2FastQ - 0:35:29 2021-09-25 19:12:32,843 DEBUG SimpleSubprocess gzip /tmp/tmpxrlj9qhm/* 2021-09-25 20:23:45,915 INFO SimpleSubprocess GZipFastQ - 1:11:13 2021-09-25 20:23:45,976 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/fastq"; mv /tmp/tmpxrlj9qhm/SRR8284500_2.fastq.gz /tmp/tmpxrlj9qhm/SRR8284500_R2.fastq.gz; mv /tmp/tmpxrlj9qhm/SRR8284500_1.fastq.gz /tmp/tmpxrlj9qhm/SRR8284500_R1.fastq.gz; cp /tmp/tmpxrlj9qhm/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/fastq" 2021-09-25 20:24:58,516 INFO SimpleSubprocess CopyFiles - 0:01:12 2021-09-25 20:24:59,817 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR8284501.sra 2021-09-25 20:24:59,818 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__ 2021-09-25 20:24:59,818 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpmmqqfb5b "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR8284501.sra" 2021-09-25 20:59:27,580 INFO SimpleSubprocess Sra2FastQ - 0:34:27 2021-09-25 20:59:27,595 DEBUG SimpleSubprocess gzip /tmp/tmpmmqqfb5b/* 2021-09-25 22:15:19,955 INFO SimpleSubprocess GZipFastQ - 1:15:52 2021-09-25 22:15:19,971 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/fastq"; mv /tmp/tmpmmqqfb5b/SRR8284501_1.fastq.gz /tmp/tmpmmqqfb5b/SRR8284501_R1.fastq.gz; mv /tmp/tmpmmqqfb5b/SRR8284501_2.fastq.gz /tmp/tmpmmqqfb5b/SRR8284501_R2.fastq.gz; cp /tmp/tmpmmqqfb5b/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/fastq" 2021-09-25 22:16:30,172 INFO SimpleSubprocess CopyFiles - 0:01:10 2021-09-25 22:16:31,673 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR8984911.sra 2021-09-25 22:16:31,674 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__ 2021-09-25 22:16:31,722 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpa59268og "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR8984911.sra" 2021-09-25 22:31:02,760 INFO SimpleSubprocess Sra2FastQ - 0:14:31 2021-09-25 22:31:02,783 DEBUG SimpleSubprocess gzip /tmp/tmpa59268og/* 2021-09-25 23:23:50,561 INFO SimpleSubprocess GZipFastQ - 0:52:47 2021-09-25 23:23:50,561 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/fastq"; mv /tmp/tmpa59268og/SRR8984911_2.fastq.gz /tmp/tmpa59268og/SRR8984911_R2.fastq.gz; mv /tmp/tmpa59268og/SRR8984911_1.fastq.gz /tmp/tmpa59268og/SRR8984911_R1.fastq.gz; cp /tmp/tmpa59268og/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/fastq" 2021-09-25 23:24:15,367 INFO SimpleSubprocess CopyFiles - 0:00:24 2021-09-25 23:24:16,595 INFO Juicer Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__ 2021-09-25 23:24:16,595 INFO Juicer Genome assembly: mm10 2021-09-25 23:24:16,595 INFO Juicer Genome FASTA path: /Data/DataBases/mm10/mm10_canonic.fa 2021-09-25 23:24:16,595 INFO Juicer Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-25 23:24:16,595 INFO Juicer Enzyme: DpnII 2021-09-25 23:24:16,595 INFO Juicer Restriction sites path: /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt 2021-09-25 23:24:16,596 INFO Juicer Threads: 10 2021-09-25 23:24:16,596 DEBUG SimpleSubprocess rm -rf "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/HIC_tmp" 2021-09-25 23:24:16,603 INFO SimpleSubprocess RemoveTrash - 0:00:00 2021-09-25 23:24:16,603 DEBUG SimpleSubprocess bash "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh" -t 10 -D "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer" -g mm10 -z "/Data/DataBases/mm10/mm10_canonic.fa" -p "/Data/DataBases/mm10/mm10_canonic.chrom.sizes" -s DpnII -y "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt" -d "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__" 2021-09-27 00:30:25,495 INFO SimpleSubprocess Juicer - 1 day, 1:06:08 2021-09-27 00:30:25,685 INFO Juicer Using /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt as site file (-: Looking for fastq files...fastq files exist (-: Aligning files matching /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/fastq/*_R*.fastq* to genome mm10 with site file /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt (-: Created /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits and /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned. bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8284500_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8284500_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8284500.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8284500.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8284501_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8284501_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8284501.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8284501.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8984911_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8984911_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8984911.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/splits/SRR8984911.fastq.gz.sam done successfully (-: Finished sorting all sorted files into a single merge. WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-26T21:12:06,508] [Globals.java:138] [main] Development mode is enabled Using 1 CPU thread(s) Not including fragment map Start preprocess Writing header Writing body ........................................................................................................................................................................................................................................ Writing footer Finished preprocess Calculating norms for zoom BP_2500000 Calculating norms for zoom BP_1000000 Calculating norms for zoom BP_500000 Calculating norms for zoom BP_250000 Calculating norms for zoom BP_100000 Calculating norms for zoom BP_50000 Calculating norms for zoom BP_25000 Calculating norms for zoom BP_10000 Calculating norms for zoom BP_5000 Calculating norms for zoom BP_1000 Finished writing norms WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-26T22:55:54,353] [Globals.java:138] [main] Development mode is enabled Using 1 CPU thread(s) Not including fragment map Start preprocess Writing header Writing body ........................................................................................................................................................................................................................................ Writing footer Finished preprocess Calculating norms for zoom BP_2500000 Calculating norms for zoom BP_1000000 Calculating norms for zoom BP_500000 Calculating norms for zoom BP_250000 Calculating norms for zoom BP_100000 Calculating norms for zoom BP_50000 Calculating norms for zoom BP_25000 Calculating norms for zoom BP_10000 Calculating norms for zoom BP_5000 Calculating norms for zoom BP_1000 Finished writing norms /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools is post-processing Hi-C for mm10 Data read from /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_30.hic. Motifs read from /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/references/motif ARROWHEAD: WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-27T00:15:24,466] [Globals.java:138] [main] Development mode is enabled Reading file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_30.hic Using 1 CPU thread(s) Default settings for 10kb being used max 21.0 4% 9% 14% 19% 23% 28% 33% 38% 42% 47% 52% 57% 61% 66% 71% 76% 80% 85% 90% 95% 100% 10 features written to file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_30_contact_domains/10000_blocks.bedpe 10 domains written to file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_30_contact_domains/10000_blocks.bedpe Arrowhead complete HiCCUPS: GPUs are not installed so HiCCUPs cannot be run (-: Postprocessing successfully completed, maps too sparse to annotate or GPUs unavailable (-: (-: Pipeline successfully completed (-: Run cleanup.sh to remove the splits directory Check /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned for results 2021-09-27 00:30:25,894 INFO MakeInterPairs Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/merged_nodups.txt 2021-09-27 00:30:25,894 INFO MakeInterPairs Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt 2021-09-27 00:30:26,055 DEBUG SimpleSubprocess awk -F " " '{print $2 "\t" $3 "\t" $6 "\t" $7}' "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/merged_nodups.txt" > "/tmp/tmpjk5ikq80/inter.pairs.txt" 2021-09-27 00:36:42,185 INFO SimpleSubprocess MakeInterPairs - 0:06:16 2021-09-27 00:36:42,203 DEBUG SimpleSubprocess cp "/tmp/tmpjk5ikq80/inter.pairs.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt" 2021-09-27 00:36:57,499 INFO SimpleSubprocess CopyFiles - 0:00:15 2021-09-27 00:36:58,738 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt 2021-09-27 00:36:58,739 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_5kb.cool 2021-09-27 00:36:58,739 INFO Pairs2Cool Genome assembly: mm10 2021-09-27 00:36:58,739 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-27 00:36:58,739 INFO Pairs2Cool Resolution [bp]: 5000 2021-09-27 00:36:58,788 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":5000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt" "/tmp/tmp2ugm9i2e/inter_no_balanced.cool" 2021-09-27 00:43:58,314 INFO SimpleSubprocess MakeCool - 0:06:59 2021-09-27 00:43:58,314 DEBUG SimpleSubprocess cp "/tmp/tmp2ugm9i2e/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_5kb.cool" 2021-09-27 00:43:58,498 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 00:43:58,548 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt 2021-09-27 00:43:58,548 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_10kb.cool 2021-09-27 00:43:58,548 INFO Pairs2Cool Genome assembly: mm10 2021-09-27 00:43:58,548 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-27 00:43:58,548 INFO Pairs2Cool Resolution [bp]: 10000 2021-09-27 00:43:58,568 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":10000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt" "/tmp/tmpixctanpy/inter_no_balanced.cool" 2021-09-27 00:50:32,116 INFO SimpleSubprocess MakeCool - 0:06:33 2021-09-27 00:50:32,116 DEBUG SimpleSubprocess cp "/tmp/tmpixctanpy/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_10kb.cool" 2021-09-27 00:50:32,228 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 00:50:32,270 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt 2021-09-27 00:50:32,270 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_20kb.cool 2021-09-27 00:50:32,270 INFO Pairs2Cool Genome assembly: mm10 2021-09-27 00:50:32,270 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-27 00:50:32,270 INFO Pairs2Cool Resolution [bp]: 20000 2021-09-27 00:50:32,297 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":20000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt" "/tmp/tmpeezyeub6/inter_no_balanced.cool" 2021-09-27 00:56:49,103 INFO SimpleSubprocess MakeCool - 0:06:16 2021-09-27 00:56:49,104 DEBUG SimpleSubprocess cp "/tmp/tmpeezyeub6/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_20kb.cool" 2021-09-27 00:56:49,211 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 00:56:49,225 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt 2021-09-27 00:56:49,225 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_25kb.cool 2021-09-27 00:56:49,225 INFO Pairs2Cool Genome assembly: mm10 2021-09-27 00:56:49,225 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-27 00:56:49,225 INFO Pairs2Cool Resolution [bp]: 25000 2021-09-27 00:56:49,274 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":25000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt" "/tmp/tmpbh9hljv7/inter_no_balanced.cool" 2021-09-27 01:03:02,799 INFO SimpleSubprocess MakeCool - 0:06:13 2021-09-27 01:03:02,799 DEBUG SimpleSubprocess cp "/tmp/tmpbh9hljv7/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_25kb.cool" 2021-09-27 01:03:02,888 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 01:03:02,900 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt 2021-09-27 01:03:02,900 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_50kb.cool 2021-09-27 01:03:02,900 INFO Pairs2Cool Genome assembly: mm10 2021-09-27 01:03:02,900 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-27 01:03:02,900 INFO Pairs2Cool Resolution [bp]: 50000 2021-09-27 01:03:02,923 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":50000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt" "/tmp/tmphrvy48js/inter_no_balanced.cool" 2021-09-27 01:09:08,190 INFO SimpleSubprocess MakeCool - 0:06:05 2021-09-27 01:09:08,191 DEBUG SimpleSubprocess cp "/tmp/tmphrvy48js/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_50kb.cool" 2021-09-27 01:09:08,263 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 01:09:08,359 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_5kb.cool 2021-09-27 01:09:08,359 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_5kb.cool 2021-09-27 01:09:08,359 INFO CTaleNormalize Capture: chr5:27,460,000-30,345,000 2021-09-27 01:09:08,360 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_5kb.cool" "/tmp/tmpus9cc6w0/inter.cool" 2021-09-27 01:09:08,498 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-27 01:09:08,498 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpus9cc6w0/inter.cool" "chr5:27,460,000-30,345,000" 2021-09-27 01:09:31,538 INFO SimpleSubprocess NormalizeCool - 0:00:23 2021-09-27 01:09:31,539 DEBUG SimpleSubprocess cp "/tmp/tmpus9cc6w0/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_5kb.cool" 2021-09-27 01:09:31,667 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 01:09:31,683 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_10kb.cool 2021-09-27 01:09:31,683 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_10kb.cool 2021-09-27 01:09:31,683 INFO CTaleNormalize Capture: chr5:27,460,000-30,345,000 2021-09-27 01:09:31,713 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_10kb.cool" "/tmp/tmpm1gh0jw7/inter.cool" 2021-09-27 01:09:31,824 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-27 01:09:31,825 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpm1gh0jw7/inter.cool" "chr5:27,460,000-30,345,000" 2021-09-27 01:09:48,041 INFO SimpleSubprocess NormalizeCool - 0:00:16 2021-09-27 01:09:48,041 DEBUG SimpleSubprocess cp "/tmp/tmpm1gh0jw7/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_10kb.cool" 2021-09-27 01:09:48,163 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 01:09:48,180 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_20kb.cool 2021-09-27 01:09:48,180 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_20kb.cool 2021-09-27 01:09:48,180 INFO CTaleNormalize Capture: chr5:27,460,000-30,345,000 2021-09-27 01:09:48,180 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_20kb.cool" "/tmp/tmp8nenoay4/inter.cool" 2021-09-27 01:09:48,287 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-27 01:09:48,288 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmp8nenoay4/inter.cool" "chr5:27,460,000-30,345,000" 2021-09-27 01:09:59,519 INFO SimpleSubprocess NormalizeCool - 0:00:11 2021-09-27 01:09:59,519 DEBUG SimpleSubprocess cp "/tmp/tmp8nenoay4/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_20kb.cool" 2021-09-27 01:09:59,626 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 01:09:59,641 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_25kb.cool 2021-09-27 01:09:59,641 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_25kb.cool 2021-09-27 01:09:59,642 INFO CTaleNormalize Capture: chr5:27,460,000-30,345,000 2021-09-27 01:09:59,665 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_25kb.cool" "/tmp/tmpkunx31c_/inter.cool" 2021-09-27 01:09:59,761 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-27 01:09:59,762 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpkunx31c_/inter.cool" "chr5:27,460,000-30,345,000" 2021-09-27 01:10:09,258 INFO SimpleSubprocess NormalizeCool - 0:00:09 2021-09-27 01:10:09,258 DEBUG SimpleSubprocess cp "/tmp/tmpkunx31c_/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_25kb.cool" 2021-09-27 01:10:09,355 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 01:10:09,388 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_50kb.cool 2021-09-27 01:10:09,388 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_50kb.cool 2021-09-27 01:10:09,388 INFO CTaleNormalize Capture: chr5:27,460,000-30,345,000 2021-09-27 01:10:09,410 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_50kb.cool" "/tmp/tmpb9c7akuc/inter.cool" 2021-09-27 01:10:09,489 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-27 01:10:09,490 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmpb9c7akuc/inter.cool" "chr5:27,460,000-30,345,000" 2021-09-27 01:10:15,458 INFO SimpleSubprocess NormalizeCool - 0:00:05 2021-09-27 01:10:15,458 DEBUG SimpleSubprocess cp "/tmp/tmpb9c7akuc/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_50kb.cool" 2021-09-27 01:10:15,538 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 01:10:15,551 DEBUG SimpleSubprocess echo > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/vector.txt 2021-09-27 01:10:15,557 INFO SimpleSubprocess MakeVector - 0:00:00 2021-09-27 01:10:15,581 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_5kb.cool 2021-09-27 01:10:15,581 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/vector.txt 2021-09-27 01:10:15,581 INFO AddWeight Chromosome: chr5 2021-09-27 01:10:15,581 INFO AddWeight Resolution [bp]: 5000 2021-09-27 01:10:20,601 INFO AddWeight AddWeight successfully finished 2021-09-27 01:10:20,629 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_10kb.cool 2021-09-27 01:10:20,629 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/vector.txt 2021-09-27 01:10:20,629 INFO AddWeight Chromosome: chr5 2021-09-27 01:10:20,629 INFO AddWeight Resolution [bp]: 10000 2021-09-27 01:10:20,697 INFO AddWeight AddWeight successfully finished 2021-09-27 01:10:20,697 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_20kb.cool 2021-09-27 01:10:20,697 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/vector.txt 2021-09-27 01:10:20,697 INFO AddWeight Chromosome: chr5 2021-09-27 01:10:20,697 INFO AddWeight Resolution [bp]: 20000 2021-09-27 01:10:20,734 INFO AddWeight AddWeight successfully finished 2021-09-27 01:10:20,734 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_25kb.cool 2021-09-27 01:10:20,734 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/vector.txt 2021-09-27 01:10:20,734 INFO AddWeight Chromosome: chr5 2021-09-27 01:10:20,734 INFO AddWeight Resolution [bp]: 25000 2021-09-27 01:10:20,760 INFO AddWeight AddWeight successfully finished 2021-09-27 01:10:20,760 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_50kb.cool 2021-09-27 01:10:20,760 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/vector.txt 2021-09-27 01:10:20,761 INFO AddWeight Chromosome: chr5 2021-09-27 01:10:20,761 INFO AddWeight Resolution [bp]: 50000 2021-09-27 01:10:20,782 INFO AddWeight AddWeight successfully finished 2021-09-27 01:10:20,795 INFO Vector2HiC Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.hic 2021-09-27 01:10:20,796 INFO Vector2HiC Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_norm.hic 2021-09-27 01:10:20,796 INFO Vector2HiC Vector: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/vector.txt 2021-09-27 01:10:20,796 INFO Vector2HiC Threads: 10 2021-09-27 01:10:20,904 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.hic" "/tmp/tmp7t7likoh/inter.hic" 2021-09-27 01:10:24,340 INFO SimpleSubprocess TempFiles - 0:00:03 2021-09-27 01:10:24,340 INFO Vector2HiC Vector: vector c-tale_normalization chr5 5000 BP 2021-09-27 01:10:24,341 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmp7t7likoh/inter.hic" "/tmp/tmp7t7likoh/vector.txt" 2021-09-27 01:10:30,603 INFO SimpleSubprocess NormalizeHiC - 0:00:06 2021-09-27 01:10:30,603 INFO Vector2HiC Vector: vector c-tale_normalization chr5 10000 BP 2021-09-27 01:10:30,604 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmp7t7likoh/inter.hic" "/tmp/tmp7t7likoh/vector.txt" 2021-09-27 01:10:35,154 INFO SimpleSubprocess NormalizeHiC - 0:00:04 2021-09-27 01:10:35,155 INFO Vector2HiC Vector: vector c-tale_normalization chr5 20000 BP 2021-09-27 01:10:35,155 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmp7t7likoh/inter.hic" "/tmp/tmp7t7likoh/vector.txt" 2021-09-27 01:10:39,437 INFO SimpleSubprocess NormalizeHiC - 0:00:04 2021-09-27 01:10:39,437 INFO Vector2HiC Vector: vector c-tale_normalization chr5 25000 BP 2021-09-27 01:10:39,438 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmp7t7likoh/inter.hic" "/tmp/tmp7t7likoh/vector.txt" 2021-09-27 01:10:44,017 INFO SimpleSubprocess NormalizeHiC - 0:00:04 2021-09-27 01:10:44,017 INFO Vector2HiC Vector: vector c-tale_normalization chr5 50000 BP 2021-09-27 01:10:44,017 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmp7t7likoh/inter.hic" "/tmp/tmp7t7likoh/vector.txt" 2021-09-27 01:10:48,472 INFO SimpleSubprocess NormalizeHiC - 0:00:04 2021-09-27 01:10:48,473 DEBUG SimpleSubprocess cp "/tmp/tmp7t7likoh/inter.hic" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_norm.hic" 2021-09-27 01:10:49,262 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-27 01:10:49,422 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/merged_nodups.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/merged_nodups.txt" 2021-09-27 01:19:37,855 INFO SimpleSubprocess CopyResult - 0:08:48 2021-09-27 01:19:37,873 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.pairs.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter.pairs.txt" 2021-09-27 01:20:38,727 INFO SimpleSubprocess CopyResult - 0:01:00 2021-09-27 01:20:38,728 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/vector.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/vector.txt" 2021-09-27 01:20:38,782 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-27 01:20:38,783 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_norm.hic" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter.hic" 2021-09-27 01:20:44,278 INFO SimpleSubprocess CopyResult - 0:00:05 2021-09-27 01:20:44,278 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_statistics.txt" 2021-09-27 01:20:44,298 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-27 01:20:44,298 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_5kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_no_balanced_5kb.cool" 2021-09-27 01:20:45,519 INFO SimpleSubprocess CopyResult - 0:00:01 2021-09-27 01:20:45,519 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_5kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_5kb.cool" 2021-09-27 01:20:46,522 INFO SimpleSubprocess CopyResult - 0:00:01 2021-09-27 01:20:46,522 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_10kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_no_balanced_10kb.cool" 2021-09-27 01:20:47,904 INFO SimpleSubprocess CopyResult - 0:00:01 2021-09-27 01:20:47,904 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_10kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_10kb.cool" 2021-09-27 01:20:49,523 INFO SimpleSubprocess CopyResult - 0:00:01 2021-09-27 01:20:49,523 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_20kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_no_balanced_20kb.cool" 2021-09-27 01:20:50,617 INFO SimpleSubprocess CopyResult - 0:00:01 2021-09-27 01:20:50,618 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_20kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_20kb.cool" 2021-09-27 01:20:51,628 INFO SimpleSubprocess CopyResult - 0:00:01 2021-09-27 01:20:51,628 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_25kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_no_balanced_25kb.cool" 2021-09-27 01:20:52,636 INFO SimpleSubprocess CopyResult - 0:00:01 2021-09-27 01:20:52,637 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_25kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_25kb.cool" 2021-09-27 01:20:53,557 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-27 01:20:53,557 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_no_balanced_50kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_no_balanced_50kb.cool" 2021-09-27 01:20:54,161 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-27 01:20:54,179 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__/aligned/inter_50kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/inter_50kb.cool" 2021-09-27 01:20:54,960 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-27 01:20:55,086 DEBUG SimpleSubprocess rm -rf "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__" 2021-09-27 01:21:30,488 INFO SimpleSubprocess RemoveTemp - 0:00:35 2021-09-27 01:21:30,488 INFO BenchmarkPipeline 'SRR8284500-SRR8284501-SRR8984911' FINISHED, SUMMARY TIME - 1 day, 6:44:26